4PAV | pdb_00004pav

Structure of hypothetical protein SA1046 from S. aureus.

• PDB DOI: https://doi.org/10.2210/pdb4PAV/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Staphylococcus aureus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-04-10 Released: 2015-05-06 
• Deposition Author(s): Battaile, K.P., Mulichak, A., Lam, R., Lam, K., Soloveychik, M., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.226 (Depositor), 0.244 (DCC) 
• R-Value Work: 
  0.201 (Depositor), 0.215 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Literature

Structure of hypothetical protein SA1046 from S. aureus.

Battaile, K.P., Mulichak, A., Lam, R., Lam, K., Soloveychik, M., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors.

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 assigned by authors.

Biological Assembly 7  

Global Symmetry: Tetrahedral - T  (Explore in 3D)
Global Stoichiometry: Homo 12-mer - A12 

Biological assembly 7 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 100.35 kDa 
• Atom Count: 6,095 
• Modeled Residue Count: 755 
• Deposited Residue Count: 870 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxalase family protein	A, B, C, D, E, F	145	Staphylococcus aureus	Mutation(s): 0
UniProt
Find proteins for A0A0H2XF23 (Staphylococcus aureus (strain USA300)) Explore A0A0H2XF23  Go to UniProtKB:  A0A0H2XF23

Small Molecules

Modified Residues  1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE	A, B, C, D, E, F	MET	Selenomethionine	C5 H11 N O2 Se

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.226 (Depositor), 0.244 (DCC) 
• R-Value Work:  0.201 (Depositor), 0.215 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.65	α = 90
b = 96.65	β = 90
c = 204.12	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-05-06 
Deposition Author(s): Battaile, K.P., Mulichak, A., Lam, R., Lam, K., Soloveychik, M., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

Revision History  

• Version 1.0: 2015-05-06
  Type: Initial release
  
• Version 1.1: 2023-12-27
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
• Version 1.2: 2024-10-23
  Changes: Structure summary