4P13 | pdb_00004p13

Medium chain acyl-CoA dehydrogenase, K304E mutant

PDB DOI: https://doi.org/10.2210/pdb4P13/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-02-24 Released: 2015-03-18
Deposition Author(s): Battaile, K.P., Mohsen, A.-W., Vockley, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.73 Å
R-Value Free:
0.163 (Depositor), 0.167 (DCC)
R-Value Work:
0.145 (Depositor), 0.148 (DCC)
R-Value Observed:
0.146 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Medium chain acyl-CoA dehydrogenase, K304E mutant

Battaile, K.P., Mohsen, A.-W., Vockley, J.

To be published.

Macromolecule Content

Total Structure Weight: 173.76 kDa
Atom Count: 13,098
Modeled Residue Count: 1,546
Deposited Residue Count: 1,548
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	A, B, C, D	387	Homo sapiens	Mutation(s): 1 Gene Names: ACADM EC: 1.3.8.7
UniProt & NIH Common Fund Data Resources
Find proteins for P11310 (Homo sapiens) Explore P11310 Go to UniProtKB: P11310
PHAROS: P11310 GTEx: ENSG00000117054
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P11310
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain G [auth C] SDF format, chain H [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth D] mmCIF format, chain E [auth A] mmCIF format, chain F [auth B] mmCIF format, chain G [auth C] mmCIF format, chain H [auth D]	E [auth A], F [auth B], G [auth C], H [auth D]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.73 Å
R-Value Free: 0.163 (Depositor), 0.167 (DCC)
R-Value Work: 0.145 (Depositor), 0.148 (DCC)
R-Value Observed: 0.146 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.27	α = 90
b = 102.59	β = 90
c = 149.65	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2015-03-18

Deposition Author(s):

Battaile, K.P.

Mohsen, A.-W.

Vockley, J.

Revision History (Full details and data files)

Version 1.0: 2015-03-18
Type: Initial release
Version 1.1: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Source and taxonomy

4P13 | pdb_00004p13

Medium chain acyl-CoA dehydrogenase, K304E mutant

Literature

Medium chain acyl-CoA dehydrogenase, K304E mutant

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

Expand

Small Molecules

Experimental Data & Validation

Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Entry History

Deposition Data

Revision History (Full details and data files)