4OZ5 | pdb_00004oz5

Bacillus subtilis HmoB

• PDB DOI: https://doi.org/10.2210/pdb4OZ5/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Bacillus spizizenii ATCC 6633 = JCM 2499
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-02-13 Released: 2015-02-18 
• Deposition Author(s): Choe, J., Park, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.71 Å
• R-Value Free: 
  0.271 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.193 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.197 (Depositor) 

Literature

Bacillus subtilis HmoB

Choe, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 18.43 kDa 
• Atom Count: 1,351 
• Modeled Residue Count: 155 
• Deposited Residue Count: 155 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacillus subtilis HmoB	A	155	Bacillus spizizenii ATCC 6633 = JCM 2499	Mutation(s): 0  Gene Names: BSU6633_15062 EC: 1.14.14.18
UniProt
Find proteins for P38049 (Bacillus subtilis (strain 168)) Explore P38049  Go to UniProtKB:  P38049

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	B [auth A]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.71 Å
• R-Value Free:  0.271 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.193 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.197 (Depositor) 

Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.597	α = 90
b = 99.597	β = 90
c = 99.597	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-18 
Deposition Author(s): Choe, J., Park, S.

Revision History  

• Version 1.0: 2015-02-18
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary