4OXV | pdb_00004oxv

Crystal structure of MltF from Pseudomonas aeruginosa complexed with valine

PDB DOI: https://doi.org/10.2210/pdb4OXV/pdb

Classification: LYASE
Organism(s): Pseudomonas aeruginosa PADK2_CF510
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-02-07 Released: 2015-03-18
Deposition Author(s): Reddem, E., Thunnissen, A.M.W.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.244 (Depositor), 0.252 (DCC)
R-Value Work:
0.176 (Depositor), 0.184 (DCC)
R-Value Observed:
0.179 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of MltF from Pseudomonas aeruginosa complexed with valine

Reddem, E., Thunnissen, A.M.W.H.

To be published.

Macromolecule Content

Total Structure Weight: 49.4 kDa
Atom Count: 3,631
Modeled Residue Count: 424
Deposited Residue Count: 435
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Membrane-bound lytic murein transglycosylase F	A	435	Pseudomonas aeruginosa PADK2_CF510	Mutation(s): 0 Gene Names: CF510_16633, MltF EC: 4.2.2
UniProt
Find proteins for A0A0J9X1Z1 (Pseudomonas aeruginosa PADK2_CF510) Explore A0A0J9X1Z1 Go to UniProtKB: A0A0J9X1Z1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0J9X1Z1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VAL Query on VAL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	VALINE C₅ H₁₁ N O₂ KZSNJWFQEVHDMF-BYPYZUCNSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.244 (Depositor), 0.252 (DCC)
R-Value Work: 0.176 (Depositor), 0.184 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.881	α = 90
b = 80.671	β = 90
c = 89.219	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-03-18

Deposition Author(s):

Thunnissen, A.M.W.H.

Revision History (Full details and data files)

Version 1.0: 2015-03-18
Type: Initial release
Version 1.1: 2017-09-27
Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
Version 1.2: 2017-11-01
Changes: Author supporting evidence
Version 1.3: 2023-12-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.