4OMC

X-ray structure of human furin in complex with the competitive inhibitor meta-guanidinomethyl-Phac-RVR-Amba

PDB DOI: https://doi.org/10.2210/pdb4OMC/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2014-01-27 Released: 2014-04-09
Deposition Author(s): Dahms, S.O., Than, M.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.216
R-Value Work: 0.185

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

X-ray Structures of Human Furin in Complex with Competitive Inhibitors.

Dahms, S.O., Hardes, K., Becker, G.L., Steinmetzer, T., Brandstetter, H., Than, M.E.

(2014) ACS Chem Biol 9: 1113-1118

PubMed: 24666235 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1021/cb500087x
Primary Citation of Related Structures:
4OMC, 4OMD

PubMed Abstract:

Macromolecule Content

Total Structure Weight: 320.71 kDa
Atom Count: 23,092
Modelled Residue Count: 2,822
Deposited Residue Count: 2,922
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Furin	A, B, C, D, E A, B, C, D, E, F	482	Homo sapiens	Mutation(s): 0 Gene Names: FUR, FURIN, PACE, PCSK3 EC: 3.4.21.75
UniProt & NIH Common Fund Data Resources
Find proteins for P09958 (Homo sapiens) Explore P09958 Go to UniProtKB: P09958
PHAROS: P09958
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09958
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
meta-guanidinomethyl-phenylacetyl-Arg-Val-Arg-(amidomethyl)benzamidine	G [auth H] H [auth I] I [auth J] J [auth K] K [auth L] G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth N]	5	N/A	Mutation(s): 0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain AB [auth F] SDF format, chain BB [auth F] SDF format, chain CA [auth C] SDF format, chain CB [auth F] SDF format, chain DA [auth C] SDF format, chain EA [auth C] SDF format, chain FA [auth C] SDF format, chain LA [auth D] SDF format, chain M [auth A] SDF format, chain MA [auth D] SDF format, chain N [auth A] SDF format, chain NA [auth D] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain U [auth B] SDF format, chain UA [auth E] SDF format, chain V [auth B] SDF format, chain VA [auth E] SDF format, chain DB [auth F] SDF format, chain KA [auth D] SDF format, chain SA [auth E] SDF format, chain TA [auth E] SDF format, chain W [auth B] SDF format, chain X [auth B] MOL2 format, chain AB [auth F] MOL2 format, chain BB [auth F] MOL2 format, chain CA [auth C] MOL2 format, chain CB [auth F] MOL2 format, chain DA [auth C] MOL2 format, chain EA [auth C] MOL2 format, chain FA [auth C] MOL2 format, chain LA [auth D] MOL2 format, chain M [auth A] MOL2 format, chain MA [auth D] MOL2 format, chain N [auth A] MOL2 format, chain NA [auth D] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain U [auth B] MOL2 format, chain UA [auth E] MOL2 format, chain V [auth B] MOL2 format, chain VA [auth E] MOL2 format, chain DB [auth F] MOL2 format, chain KA [auth D] MOL2 format, chain SA [auth E] MOL2 format, chain TA [auth E] MOL2 format, chain W [auth B] MOL2 format, chain X [auth B]	AB [auth F] BB [auth F] CA [auth C] CB [auth F] DA [auth C] AB [auth F], BB [auth F], CA [auth C], CB [auth F], DA [auth C], DB [auth F], EA [auth C], FA [auth C], KA [auth D], LA [auth D], M [auth A], MA [auth D], N [auth A], NA [auth D], O [auth A], P [auth A], SA [auth E], TA [auth E], U [auth B], UA [auth E], V [auth B], VA [auth E], W [auth B], X [auth B]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain GA [auth C] SDF format, chain GB [auth F] SDF format, chain HA [auth C] SDF format, chain OA [auth D] SDF format, chain PA [auth D] SDF format, chain QA [auth D] SDF format, chain S [auth A] SDF format, chain WA [auth E] SDF format, chain XA [auth E] SDF format, chain YA [auth E] SDF format, chain Z [auth B] SDF format, chain EB [auth F] SDF format, chain FB [auth F] SDF format, chain IA [auth C] SDF format, chain Q [auth A] SDF format, chain R [auth A] SDF format, chain Y [auth B] MOL2 format, chain AA [auth B] MOL2 format, chain GA [auth C] MOL2 format, chain GB [auth F] MOL2 format, chain HA [auth C] MOL2 format, chain OA [auth D] MOL2 format, chain PA [auth D] MOL2 format, chain QA [auth D] MOL2 format, chain S [auth A] MOL2 format, chain WA [auth E] MOL2 format, chain XA [auth E] MOL2 format, chain YA [auth E] MOL2 format, chain Z [auth B] MOL2 format, chain EB [auth F] MOL2 format, chain FB [auth F] MOL2 format, chain IA [auth C] MOL2 format, chain Q [auth A] MOL2 format, chain R [auth A] MOL2 format, chain Y [auth B]	AA [auth B] EB [auth F] FB [auth F] GA [auth C] GB [auth F] AA [auth B], EB [auth F], FB [auth F], GA [auth C], GB [auth F], HA [auth C], IA [auth C], OA [auth D], PA [auth D], Q [auth A], QA [auth D], R [auth A], S [auth A], WA [auth E], XA [auth E], Y [auth B], YA [auth E], Z [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain BA [auth B] SDF format, chain JA [auth C] SDF format, chain RA [auth D] SDF format, chain T [auth A] SDF format, chain ZA [auth E] SDF format, chain HB [auth F] MOL2 format, chain BA [auth B] MOL2 format, chain JA [auth C] MOL2 format, chain RA [auth D] MOL2 format, chain T [auth A] MOL2 format, chain ZA [auth E] MOL2 format, chain HB [auth F]	BA [auth B] HB [auth F] JA [auth C] RA [auth D] T [auth A] BA [auth B], HB [auth F], JA [auth C], RA [auth D], T [auth A], ZA [auth E]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Ligand Interaction

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_001220 Query on PRD_001220	G [auth H] H [auth I] I [auth J] J [auth K] K [auth L] G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth N]	meta-guanidinomethyl-phenylacetyl-Arg-Val-Arg-(amidomethyl)benzamidine	Polypeptide / Enzyme inhibitor		Ligand Interaction