Download MendeleyThe crystal structure of anopheles anti-platelet protein, a powerful anti-coagulant, in complex with an antibody
Sugiyama, K., Iyori, M., Sawaguchi, A., Akashi, S., Tame, J.R.H., Yoshida, S., Park, S.Y.To be published.
4OKV
Crystal structure of anopheline anti-platelet protein with Fab antibody
- PDB DOI: 10.2210/pdb4OKV/pdb
- Classification: BLOOD CLOTTING
- Organism(s): Mus musculus, Anopheles stephensi
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-01-23 Released: 2014-04-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.218
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| heavy chain of 8H7 mAb | A, C | 215 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| light chain of 8H7 mAb | B, D | 218 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Anti-platelet aggregation protein | E, F | 66 | Anopheles stephensi | Mutation(s): 0 Gene Names: ansg-1, aapp |  |
UniProt | |||||
Find proteins for Q7YT37 (Anopheles stephensi) Explore Q7YT37 Go to UniProtKB: Q7YT37 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7YT37 | ||||
Protein Feature ViewExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.218
- R-Value Observed: 0.220
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.81 | α = 90 |
| b = 99.426 | β = 90 |
| c = 166.033 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| HKL-2000 | data reduction |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2014-04-30 Deposition Author(s): Park, S.Y., Sugiyama, K.
Revision History (Full details and data files)
- Version 1.0: 2014-04-30
Type: Initial release
