4OHJ | pdb_00004ohj

Crystal structure of toxic shock syndrome toxin-1 (TSST-1) from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb4OHJ/pdb

Classification: TOXIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-01-17 Released: 2014-02-05
Deposition Author(s): Filippova, E.V., Shuvalova, L., Flores, K., Dubrovska, I., Bishop, B., Ngo, H., Yeats, C., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.28 Å
R-Value Free:
0.177 (Depositor), 0.193 (DCC)
R-Value Work:
0.141 (Depositor)
R-Value Observed:
0.143 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of toxic shock syndrome toxin-1 (TSST-1) from Staphylococcus aureus

Filippova, E.V., Shuvalova, L., Flores, K., Dubrovska, I., Bishop, B., Ngo, H., Yeats, C., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 51.77 kDa
Atom Count: 3,822
Modeled Residue Count: 391
Deposited Residue Count: 458
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Toxic shock syndrome toxin-1	A, B	229	Staphylococcus aureus	Mutation(s): 0 Gene Names: tst
UniProt
Find proteins for P06886 (Staphylococcus aureus) Explore P06886 Go to UniProtKB: P06886
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P06886
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.28 Å
R-Value Free: 0.177 (Depositor), 0.193 (DCC)
R-Value Work: 0.141 (Depositor)
R-Value Observed: 0.143 (Depositor)

Diffraction Data:

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.922	α = 90
b = 40.316	β = 117.3
c = 98.76	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
BALBES	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-02-05

Deposition Author(s):

Filippova, E.V.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2014-02-05
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2018-01-24
Changes: Database references
Version 1.3: 2018-02-07
Changes: Database references
Version 1.4: 2023-09-20
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.