4OF1 | pdb_00004of1

crystal structure of toxin from staphylococcus aureus Mu50

• PDB DOI: https://doi.org/10.2210/pdb4OF1/pdb

• Classification: TOXIN
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-01-14 Released: 2015-01-14 
• Deposition Author(s): Park, J.Y., Im, H., Seok, S.H., Lee, B.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 
  0.225 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.164 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.167 (Depositor) 

Literature

Structural Insights into the toxin from Staphylococcus aureus Mu50

Park, J.Y., Im, H., Seok, S.H., Lee, B.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 29.07 kDa 
• Atom Count: 1,873 
• Modeled Residue Count: 230 
• Deposited Residue Count: 256 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA interferase MazF	A, B	128	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0  Gene Names: mazF, SAV2068 EC: 3.1
UniProt
Find proteins for Q7A2N3 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore Q7A2N3  Go to UniProtKB:  Q7A2N3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free:  0.225 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.164 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.167 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.274	α = 90
b = 127.274	β = 90
c = 41.916	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-01-14 
Deposition Author(s): Park, J.Y., Im, H., Seok, S.H., Lee, B.J.

Revision History  

• Version 1.0: 2015-01-14
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references