4OF1 | pdb_00004of1

crystal structure of toxin from staphylococcus aureus Mu50

PDB DOI: https://doi.org/10.2210/pdb4OF1/pdb

Classification: TOXIN
Organism(s): Staphylococcus aureus subsp. aureus Mu50
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-01-14 Released: 2015-01-14
Deposition Author(s): Park, J.Y., Im, H., Seok, S.H., Lee, B.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.225 (Depositor), 0.215 (DCC)
R-Value Work:
0.164 (Depositor)
R-Value Observed:
0.167 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4OF1

This is version 1.1 of the entry. See complete history.

Literature

Structural Insights into the toxin from Staphylococcus aureus Mu50

Park, J.Y., Im, H., Seok, S.H., Lee, B.J.

To be published.

Macromolecule Content

Total Structure Weight: 29.07 kDa
Atom Count: 1,873
Modeled Residue Count: 230
Deposited Residue Count: 256
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA interferase MazF	A, B	128	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0 Gene Names: mazF, SAV2068 EC: 3.1
UniProt
Find proteins for Q7A2N3 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore Q7A2N3 Go to UniProtKB: Q7A2N3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7A2N3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.225 (Depositor), 0.215 (DCC)
R-Value Work: 0.164 (Depositor)
R-Value Observed: 0.167 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.274	α = 90
b = 127.274	β = 90
c = 41.916	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-01-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-01-14
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.