4ODB

Crystal structure of the T1L reovirus attachment protein sigma1 in complex with Junctional Adhesion Molecule-A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The JAM-A binding site is conserved in reovirus sigma1: Structure of the T1L sigma1-JAM-A complex

Stettner, E.Reiss, K.Dietrich, M.Stehle, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Outer capsid protein sigma-1A, B, C165Mammalian orthoreovirus 1 LangMutation(s): 0 
Gene Names: S1
UniProt
Find proteins for P04506 (Reovirus type 1 (strain Lang))
Explore P04506 
Go to UniProtKB:  P04506
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Junctional adhesion molecule AD, E, F104Homo sapiensMutation(s): 0 
Gene Names: F11RJAM1JCAMUNQ264/PRO301
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y624 (Homo sapiens)
Explore Q9Y624 
Go to UniProtKB:  Q9Y624
PHAROS:  Q9Y624
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 156.77α = 90
b = 156.77β = 90
c = 96.54γ = 120
Software Package:
Software NamePurpose
PHASERphasing
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-04-01
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Refinement description