4O06

1.15A Resolution Structure of the Proteasome Assembly Chaperone Nas2 PDZ Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.173 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

1.15 angstrom resolution structure of the proteasome-assembly chaperone Nas2 PDZ domain.

Singh, C.R.Lovell, S.Mehzabeen, N.Chowdhury, W.Q.Geanes, E.S.Battaile, K.P.Roelofs, J.

(2014) Acta Crystallogr F Struct Biol Commun 70: 418-423

  • DOI: https://doi.org/10.1107/S2053230X14003884
  • Primary Citation of Related Structures:  
    4O06

  • PubMed Abstract: 

    The 26S proteasome is a 2.5 MDa protease dedicated to the degradation of ubiquitinated proteins in eukaryotes. The assembly of this complex containing 66 polypeptides is assisted by at least nine proteasome-specific chaperones. One of these, Nas2, binds to the proteasomal AAA-ATPase subunit Rpt5. The PDZ domain of Nas2 binds to the C-terminal tail of Rpt5; however, it does not require the C-terminus of Rpt5 for binding. Here, the 1.15 Å resolution structure of the PDZ domain of Nas2 is reported. This structure will provide a basis for further insights regarding the structure and function of Nas2 in proteasome assembly.


  • Organizational Affiliation

    Division of Biology, Kansas State University, 338 Ackert Hall, Manhattan, KS 66506, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable 26S proteasome regulatory subunit p27106Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NAS2YIL007C
UniProt
Find proteins for P40555 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40555 
Go to UniProtKB:  P40555
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40555
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.173 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.968α = 90
b = 39.968β = 90
c = 115.827γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
JDirectordata collection
XSCALEdata scaling
BALBESphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-16
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Refinement description
  • Version 1.2: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description