Download MendeleyThe crystal structure of a CBS Domain-containing Protein of Unknown Function from Kribbella flavida DSM 17836.
Tan, K., Hatzos-Skintges, C., Jedrzejczak, R., Joachimiak, A.To be published.
4NOC
The crystal structure of a CBS Domain-containing Protein of Unknown Function from Kribbella flavida DSM 17836.
- PDB DOI: https://doi.org/10.2210/pdb4NOC/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-11-19 Released: 2013-11-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.240
- R-Value Work: 0.193
- R-Value Observed: 0.195
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative signal transduction protein with CBS domains | A, B, C, D | 151 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_0464 |  |
UniProt | |||||
Find proteins for D2PVT0 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2PVT0 Go to UniProtKB: D2PVT0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2PVT0 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], H [auth B], I [auth B], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.240
- R-Value Work: 0.193
- R-Value Observed: 0.195
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.434 | α = 90 |
| b = 99.434 | β = 90 |
| c = 260.582 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2013-11-27 Deposition Author(s): Tan, K., Hatzos-Skintges, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-11-27
Type: Initial release
