Macromolecule Content

Total Structure Weight: 30.11 kDa
Atom Count: 1,973
Modelled Residue Count: 240
Deposited Residue Count: 277
Unique protein chains: 1

4NIM

Crystal Structure of a Short Chain Dehydrogenase from Brucella melitensis

PDB DOI: https://doi.org/10.2210/pdb4NIM/pdb

Classification: OXIDOREDUCTASE
Organism(s): Brucella melitensis ATCC 23457
Mutation(s): No

Deposited: 2013-11-06 Released: 2013-11-20
Deposition Author(s): Dranow, D.M., Edwards, T.E., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.186
R-Value Work: 0.154
R-Value Observed: 0.156

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of a Short Chain Dehydrogenase from Brucella melitensis

Dranow, D.M., Edwards, T.E., Lorimer, D.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Versicolorin reductase	A	277	Brucella melitensis ATCC 23457	Mutation(s): 0 Gene Names: BMEA_A1386
UniProt
Find proteins for C0RJU5 (Brucella melitensis biotype 2 (strain ATCC 23457)) Explore C0RJU5 Go to UniProtKB: C0RJU5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C0RJU5
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.186
R-Value Work: 0.154
R-Value Observed: 0.156
Space Group: I 4₁ 2 2
Diffraction Data: https://doi.org/10.18430/M34NIM

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 118.21	α = 90
b = 118.21	β = 90
c = 85.18	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-11-20

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2013-11-20
Type: Initial release
Version 1.1: 2014-02-26
Changes: Structure summary
Version 1.2: 2015-09-16
Changes: Other, Structure summary
Version 1.3: 2017-11-22
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.