4NAV

Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target EFI-508608

PDB DOI: https://doi.org/10.2210/pdb4NAV/pdb

Classification: HYDROLASE
Organism(s): Xanthomonas campestris pv. campestris str. ATCC 33913
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-10-22 Released: 2013-11-06
Deposition Author(s): Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Zhao, S.C., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free: 0.275
R-Value Work: 0.244
R-Value Observed: 0.245

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target EFI-508608

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Zhao, S., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published.

Macromolecule Content

Total Structure Weight: 78.27 kDa
Atom Count: 5,368
Modelled Residue Count: 726
Deposited Residue Count: 728
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL PROTEIN XCC279	A [auth D], B [auth A], C [auth B], D [auth C]	182	Xanthomonas campestris pv. campestris str. ATCC 33913	Mutation(s): 0 Gene Names: XCC2798
UniProt
Find proteins for Q8P716 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P716 Go to UniProtKB: Q8P716
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8P716
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free: 0.275
R-Value Work: 0.244
R-Value Observed: 0.245
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.903	α = 90
b = 156.017	β = 90
c = 111.509	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
DENZO	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-11-06

Deposition Author(s):

Al Obaidi, N.F.

Wasserman, S.R.

Enzyme Function Initiative (EFI)

Revision History (Full details and data files)

Version 1.0: 2013-11-06
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.