4NAC | pdb_00004nac

Crystal Structure of the N-terminal Domain of p15RS

PDB DOI: https://doi.org/10.2210/pdb4NAC/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-10-22 Released: 2013-12-11
Deposition Author(s): Mei, K., Jin, Z., Ren, F., Wang, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.214 (Depositor), 0.213 (DCC)
R-Value Work:
0.174 (Depositor), 0.172 (DCC)
R-Value Observed:
0.176 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the N-terminal Domain of p15RS

Mei, K., Jin, Z., Ren, F., Wang, Y., Chang, Z., Wang, X.

To be published.

Macromolecule Content

Total Structure Weight: 32.64 kDa
Atom Count: 2,427
Modeled Residue Count: 267
Deposited Residue Count: 278
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Regulation of nuclear pre-mRNA domain-containing protein 1A	A, B	139	Homo sapiens	Mutation(s): 0 Gene Names: P15RS, RPRD1A
UniProt & NIH Common Fund Data Resources
Find proteins for Q96P16 (Homo sapiens) Explore Q96P16 Go to UniProtKB: Q96P16
PHAROS: Q96P16 GTEx: ENSG00000141425
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96P16
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.214 (Depositor), 0.213 (DCC)
R-Value Work: 0.174 (Depositor), 0.172 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.691	α = 90
b = 47.326	β = 100.24
c = 68.019	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-12-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-12-11
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.