4N78

The WAVE Regulatory Complex Links Diverse Receptors to the Actin Cytoskeleton


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The WAVE Regulatory Complex Links Diverse Receptors to the Actin Cytoskeleton.

Chen, B.Brinkmann, K.Chen, Z.Pak, C.W.Liao, Y.Shi, S.Henry, L.Grishin, N.V.Bogdan, S.Rosen, M.K.

(2014) Cell 156: 195-207

  • DOI: 10.1016/j.cell.2013.11.048
  • Primary Citation of Related Structures:  
    4N78

  • PubMed Abstract: 
  • The WAVE regulatory complex (WRC) controls actin cytoskeletal dynamics throughout the cell by stimulating the actin-nucleating activity of the Arp2/3 complex at distinct membrane sites. However, the factors that recruit the WRC to specific locations remain poorly understood ...

    The WAVE regulatory complex (WRC) controls actin cytoskeletal dynamics throughout the cell by stimulating the actin-nucleating activity of the Arp2/3 complex at distinct membrane sites. However, the factors that recruit the WRC to specific locations remain poorly understood. Here, we have identified a large family of potential WRC ligands, consisting of ∼120 diverse membrane proteins, including protocadherins, ROBOs, netrin receptors, neuroligins, GPCRs, and channels. Structural, biochemical, and cellular studies reveal that a sequence motif that defines these ligands binds to a highly conserved interaction surface of the WRC formed by the Sra and Abi subunits. Mutating this binding surface in flies resulted in defects in actin cytoskeletal organization and egg morphology during oogenesis, leading to female sterility. Our findings directly link diverse membrane proteins to the WRC and actin cytoskeleton and have broad physiological and pathological ramifications in metazoans.


    Organizational Affiliation

    Department of Biophysics and Howard Hughes Medical Institute, University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, TX 75390, USA. Electronic address: michael.rosen@utsouthwestern.edu.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytoplasmic FMR1-interacting protein 1A1253Homo sapiensMutation(s): 0 
Gene Names: CYFIP1KIAA0068
Find proteins for Q7L576 (Homo sapiens)
Explore Q7L576 
Go to UniProtKB:  Q7L576
NIH Common Fund Data Resources
PHAROS:  Q7L576
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Nck-associated protein 1B1128Homo sapiensMutation(s): 0 
Gene Names: NCKAP1HEM2KIAA0587NAP1
Find proteins for Q9Y2A7 (Homo sapiens)
Explore Q9Y2A7 
Go to UniProtKB:  Q9Y2A7
NIH Common Fund Data Resources
PHAROS:  Q9Y2A7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Wiskott-Aldrich syndrome protein family member 1C [auth D]559Homo sapiensMutation(s): 0 
Gene Names: WASF1KIAA0269SCAR1WAVE1
Find proteins for Q92558 (Homo sapiens)
Explore Q92558 
Go to UniProtKB:  Q92558
NIH Common Fund Data Resources
PHAROS:  Q92558
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Protein BRICK1D [auth E]75Homo sapiensMutation(s): 0 
Gene Names: BRK1C3orf10HSPC300MDS027
Find proteins for Q8WUW1 (Homo sapiens)
Explore Q8WUW1 
Go to UniProtKB:  Q8WUW1
NIH Common Fund Data Resources
PHAROS:  Q8WUW1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Abl interactor 2E [auth F]514Homo sapiensMutation(s): 0 
Gene Names: ABI2ARGBPIA
Find proteins for Q9NYB9 (Homo sapiens)
Explore Q9NYB9 
Go to UniProtKB:  Q9NYB9
NIH Common Fund Data Resources
PHAROS:  Q9NYB9
Protein Feature View
Expand
  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
WIRSF [auth P]15N/AMutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
H [auth A] , I [auth A] , J [auth A] , K [auth A] , L [auth A] , P [auth B] , Q [auth B] , R [auth B] , 
H [auth A],  I [auth A],  J [auth A],  K [auth A],  L [auth A],  P [auth B],  Q [auth B],  R [auth B],  S [auth B],  T [auth B],  U [auth B],  V [auth B],  W [auth B],  X [auth B],  Y [auth F],  Z [auth F]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
G [auth A], M [auth B], N [auth B], O [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 
  • Space Group: P 21 21 21
  • Diffraction Data DOI: 10.15785/SBGRID/132 SBGrid
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.492α = 90
b = 114.75β = 90
c = 323.605γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2013-10-15 
  • Released Date: 2014-02-05 
  • Deposition Author(s): Chen, Z.C.

Revision History  (Full details and data files)

  • Version 1.0: 2014-02-05
    Type: Initial release