4MF0

ITK kinase domain in complex with benzothiazole inhibitor compound 12a (1S,2S)-2-{4-[(DIMETHYLAMINO)METHYL]PHENYL}-N-[6-(PYRIDIN-3-YL)-1,3-BENZOTHIAZOL-2-YL]CYCLOPROPANECARBOXAMIDE (12a)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure-based design and synthesis of potent benzothiazole inhibitors of interleukin-2 inducible T cell kinase (ITK).

Mackinnon, C.H.Lau, K.Burch, J.D.Chen, Y.Dines, J.Ding, X.Eigenbrot, C.Heifetz, A.Jaochico, A.Johnson, A.Kraemer, J.Kruger, S.Krulle, T.M.Liimatta, M.Ly, J.Maghames, R.Montalbetti, C.A.Ortwine, D.F.Perez-Fuertes, Y.Shia, S.Stein, D.B.Trani, G.Vaidya, D.G.Wang, X.Bromidge, S.M.Wu, L.C.Pei, Z.

(2013) Bioorg.Med.Chem.Lett. 23: 6331-6335

  • DOI: 10.1016/j.bmcl.2013.09.069
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Inhibition of the non-receptor tyrosine kinase ITK, a component of the T-cell receptor signalling cascade, may represent a novel treatment for allergic asthma. Here we report the structure-based optimization of a series of benzothiazole amides that d ...

    Inhibition of the non-receptor tyrosine kinase ITK, a component of the T-cell receptor signalling cascade, may represent a novel treatment for allergic asthma. Here we report the structure-based optimization of a series of benzothiazole amides that demonstrate sub-nanomolar inhibitory potency against ITK with good cellular activity and kinase selectivity. We also elucidate the binding mode of these inhibitors by solving the X-ray crystal structures of several inhibitor-ITK complexes.


    Organizational Affiliation

    Evotec (UK) Ltd, 114 Milton Park, Abingdon, Oxfordshire OX14 4SA, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine-protein kinase ITK/TSK
A, B
266Homo sapiensMutation(s): 1 
Gene Names: ITK (EMT, LYK)
EC: 2.7.10.2
Find proteins for Q08881 (Homo sapiens)
Go to Gene View: ITK
Go to UniProtKB:  Q08881
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
29Z
Query on 29Z

Download SDF File 
Download CCD File 
A, B
(1S,2S)-2-{4-[(dimethylamino)methyl]phenyl}-N-[6-(pyridin-3-yl)-1,3-benzothiazol-2-yl]cyclopropanecarboxamide
C25 H24 N4 O S
PGABPPHMLFSKKA-RTWAWAEBSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
29ZKi: 8.4 nM (99) BINDINGDB
29ZIC50: 10000 nM (99) BINDINGDB
29ZKi: 8.4 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.212 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 40.145α = 90.00
b = 155.488β = 93.74
c = 47.257γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data reduction
MAR345dtbdata collection
BUSTERrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-13
    Type: Initial release
  • Version 1.1: 2013-11-20
    Type: Database references