Download MendeleyStructure of glycerol dehydrogenase from Serratia
Musille, P.M., Ortlund, E.A.(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun
4MCA
Crystal Structure of Glycerol Dehydrogenase from Serratia to 1.9A
- PDB DOI: 10.2210/pdb4MCA/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Serratia plymuthica A30
- Mutation(s): No
- Deposited: 2013-08-21 Released: 2014-02-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215
- R-Value Work: 0.177
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycerol dehydrogenase | A, B | 367 | Serratia plymuthica A30 | Mutation(s): 0 EC: 1.1.1.6 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A], F [auth A], I [auth B], J [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | C [auth A], D [auth A], H [auth B], K [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | G [auth A], L [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 117.507 | α = 90 |
| b = 117.507 | β = 90 |
| c = 259.863 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SERGUI | data collection |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2014-02-12 Deposition Author(s): Musille, P.M., Ortlund, E.A.
Revision History (Full details and data files)
- Version 1.0: 2014-02-12
Type: Initial release
