4M88

Crystal structure of extracellular ligand-binding receptor from Verminephrobacter eiseniae ef01-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.762 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of extracellular ligand-binding receptor from Verminephrobacter eiseniae ef01-2

Wu, R.Endres, M.Joachimiak, A.Midwest Center for Structural Genomics

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Extracellular ligand-binding receptor
A
357Verminephrobacter eiseniae (strain EF01-2)N/A
Find proteins for A1WL96 (Verminephrobacter eiseniae (strain EF01-2))
Go to UniProtKB:  A1WL96
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.762 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.172 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 36.076α = 90.00
b = 95.810β = 111.56
c = 50.300γ = 90.00
Software Package:
Software NamePurpose
MLPHAREphasing
PHENIXrefinement
HKL-3000data collection
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-06
    Type: Initial release
  • Version 1.1: 2013-12-04
    Type: Data collection
  • Version 1.2: 2013-12-18
    Type: Structure summary
  • Version 1.3: 2018-01-24
    Type: Database references