4LP5

Crystal structure of the full-length human RAGE extracellular domain (VC1C2 fragment)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.242 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structural insights into the oligomerization mode of the human receptor for advanced glycation end-products.

Yatime, L.Andersen, G.R.

(2013) Febs J. 280: 6556-6568


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Advanced glycosylation end product-specific receptor
B, A
304Homo sapiensGene Names: AGER (RAGE)
Find proteins for Q15109 (Homo sapiens)
Go to Gene View: AGER
Go to UniProtKB:  Q15109
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.242 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 180.010α = 90.00
b = 180.010β = 90.00
c = 48.950γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
RemDAqdata collection
XSCALEdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-16
    Type: Initial release
  • Version 1.1: 2013-10-30
    Type: Database references
  • Version 1.2: 2013-11-27
    Type: Database references
  • Version 1.3: 2013-12-18
    Type: Database references
  • Version 1.4: 2017-11-15
    Type: Refinement description