4LID

A100, A DNA binding scaffold from Sulfolobus spindle-shape virus 1

PDB DOI: https://doi.org/10.2210/pdb4LID/pdb

Classification: VIRAL PROTEIN
Organism(s): Sulfolobus spindle-shaped virus 1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-07-02 Released: 2014-09-24
Deposition Author(s): Eilers, B.J., Wagner, C., Thomas, M.M., Lawrence, C.M., Young, M.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.251
R-Value Work: 0.237
R-Value Observed: 0.238

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A100, A DNA binding scaffold from Sulfolobus spindle-shape virus 1

Eilers, B.J., Wagner, C., Thomas, M.M., Lawrence, C.M., Young, M.J.

To be published.

Macromolecule Content

Total Structure Weight: 25.39 kDa
Atom Count: 1,438
Modelled Residue Count: 172
Deposited Residue Count: 212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
A-100	A, B	106	Sulfolobus spindle-shaped virus 1	Mutation(s): 0 Gene Names: a100
UniProt
Find proteins for P20194 (Sulfolobus spindle-shape virus 1) Explore P20194 Go to UniProtKB: P20194
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P20194
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.251
R-Value Work: 0.237
R-Value Observed: 0.238
Space Group: P 6₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 152.999	α = 90
b = 152.999	β = 90
c = 61.727	γ = 120

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHENIX	model building
REFMAC	refinement
autoXDS	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-09-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-09-24
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.