4LDP | pdb_00004ldp

Spinosyn Forosaminyltransferase SpnP

PDB DOI: https://doi.org/10.2210/pdb4LDP/pdb

Classification: TRANSFERASE
Organism(s): Saccharopolyspora spinosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-06-24 Released: 2014-12-24
Deposition Author(s): Isiorho, E.A., Liu, H.-W., Keatinge-Clay, A.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.257 (Depositor), 0.260 (DCC)
R-Value Work:
0.200 (Depositor), 0.200 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

SpnP; Structural Insights into the Activation of GT-1 Glycosyltransferases by Helper Proteins

Isiorho, E.A., Jeon, B.-S., Liu, H.-W., Keatinge-Clay, A.K.

To be published.

Macromolecule Content

Total Structure Weight: 101 kDa
Atom Count: 5,856
Modeled Residue Count: 742
Deposited Residue Count: 910
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NDP-forosamyltransferase	A, B	455	Saccharopolyspora spinosa	Mutation(s): 0 Gene Names: spnP
UniProt
Find proteins for Q9ALN7 (Saccharopolyspora spinosa) Explore Q9ALN7 Go to UniProtKB: Q9ALN7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9ALN7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257 (Depositor), 0.260 (DCC)
R-Value Work: 0.200 (Depositor), 0.200 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 162.421	α = 90
b = 162.421	β = 90
c = 81.228	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-12-24

Deposition Author(s):

Keatinge-Clay, A.K.

Revision History (Full details and data files)

Version 1.0: 2014-12-24
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.