4LDN

Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)

Sampathkumar, P.Ahmed, M.Attonito, J.Bhosle, R.Bonanno, J.Chamala, S.Chowdhury, S.Eromenok, G.Fiser, A.Glenn, A.S.Hammonds, J.Himmel, D.M.Hillerich, B.Khafizov, K.Lafleur, J.Love, J.D.Stead, M.Seidel, R.Toro, R.Morisco, L.L.Sojitra, S.S.Wasserman, S.R.Suarez, J.Schramm, V.L.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Purine nucleoside phosphorylase DeoD-typeA261Aliivibrio fischeri ES114Mutation(s): 0 
Gene Names: deoD3VF_A0968
EC: 2.4.2.1
Find proteins for Q5DYV8 (Aliivibrio fischeri (strain ATCC 700601 / ES114))
Explore Q5DYV8 
Go to UniProtKB:  Q5DYV8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 163.115α = 90
b = 163.115β = 90
c = 45.339γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
XDSdata reduction
Aimlessdata scaling
SHELXphasing
SHELXDphasing
SHELXEmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-03
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description