4L9Q

X-ray study of human serum albumin complexed with teniposide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural studies of several clinically important oncology drugs in complex with human serum albumin.

Wang, Z.M.Ho, J.X.Ruble, J.R.Rose, J.Ruker, F.Ellenburg, M.Murphy, R.Click, J.Soistman, E.Wilkerson, L.Carter, D.C.

(2013) Biochim Biophys Acta 1830: 5356-5374

  • DOI: 10.1016/j.bbagen.2013.06.032
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Serum albumin is a major pharmacokinetic effector of drugs. To gain further insight into albumin binding chemistry, the crystal structures of six oncology agents were determined in complex with human serum albumin at resolutions of 2.8 to 2.0Å: campt ...

    Serum albumin is a major pharmacokinetic effector of drugs. To gain further insight into albumin binding chemistry, the crystal structures of six oncology agents were determined in complex with human serum albumin at resolutions of 2.8 to 2.0Å: camptothecin, 9-amino-camptothecin, etoposide, teniposide, bicalutamide and idarubicin.


    Related Citations: 
    • Crystallographic survey of albumin drug interaction and preliminary applications in cancer chemotherapy
      Carter, D.C.
      (2010) Burgers Medicinal Chemistry Drug Design And Development, 7th Edition --: 437
    • Structure of Serum Albumin
      Carter, D.C., Ho, J.X.
      (1994) Adv Protein Chem 45: 153
    • Preliminary crystallographic studies of four crystal forms of serum albumin.
      Carter, D.C., Chang, B., Ho, J.X., Keeling, K., Krishnasami, Z.
      (1994) Eur J Biochem 226: 1049
    • Erratum. Atomic Structure and Chemistry of Human Serum Albumin
      Ho, X.M., Carter, D.C.
      (1993) Nature 364: 362
    • Atomic structure and chemistry of human serum albumin.
      He, X.M., Carter, D.C.
      (1992) Nature 358: 209
    • Structure of Human Serum Albumin
      Carter, D.C., Ho, X.M.
      (1990) Science 249: 302
    • Three-dimensional structure of human serum albumin.
      Carter, D.C., He, X.M., Munson, S.H., Twigg, P.D., Gernert, K.M., Broom, M.B., Miller, T.Y.
      (1989) Science 244: 1195

    Organizational Affiliation

    New Century Pharmaceuticals, Inc., 895 Martin Road, Suite C, Huntsville, AL 35824, USA.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SERUM ALBUMIN
A, B
585Homo sapiensMutation(s): 0 
Gene Names: ALBGIG20GIG42PRO0903PRO1708PRO2044PRO2619PRO2675UNQ696/PRO1341
Find proteins for P02768 (Homo sapiens)
Go to UniProtKB:  P02768
NIH Common Fund Data Resources
PHAROS  P02768
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9TP
Query on 9TP

Download CCD File 
A, B
(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl 4,6-O-(thiophen-2-ylmethylidene)-beta-D-glucopyranoside
C32 H32 O13 S
NRUKOCRGYNPUPR-QBPJDGROSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.353α = 73.17
b = 59.588β = 83.45
c = 95.539γ = 73.93
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
MERLOTphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-07-24
    Type: Initial release
  • Version 1.1: 2013-10-23
    Changes: Database references
  • Version 1.2: 2014-02-19
    Changes: Other