Download MendeleyCrystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.60 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4L8P
Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.60 A resolution
- PDB DOI: https://doi.org/10.2210/pdb4L8P/pdb
- Classification: LYASE
- Organism(s): Peptacetobacter hiranonis DSM 13275
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-06-17 Released: 2013-08-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.181
- R-Value Work: 0.151
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bile acid 7a-dehydratase, BaiE | 187 | Peptacetobacter hiranonis DSM 13275 | Mutation(s): 0 Gene Names: baiE, CLOHIR_00079 EC: 4.2.1.106 |  | |
UniProt | |||||
Find proteins for Q9RB47 (Peptacetobacter hiranonis (strain DSM 13275 / JCM 10541 / KCTC 15199 / TO-931)) Explore Q9RB47 Go to UniProtKB: Q9RB47 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9RB47 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 1PE Query on 1PE | E [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | D [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.181
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 63
- Diffraction Data: https://doi.org/10.18430/M34L8P
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.905 | α = 90 |
| b = 58.905 | β = 90 |
| c = 91.34 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHARP | phasing |
| SCALA | data scaling |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2013-08-21 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-08-21
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2023-02-01
Changes: Database references, Derived calculations
