4L72
Crystal structure of MERS-CoV complexed with human DPP4
- PDB DOI: https://doi.org/10.2210/pdb4L72/pdb
- Classification: HYDROLASE/VIRAL PROTEIN
- Organism(s): Homo sapiens, Middle East respiratory syndrome-related coronavirus
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Deposited: 2013-06-13 Released: 2013-08-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.253 
- R-Value Work: 0.205 
- R-Value Observed: 0.207 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dipeptidyl peptidase 4 | 728 | Homo sapiens | Mutation(s): 0  Gene Names: DPP4, ADCP2, CD26 EC: 3.4.14.5 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P27487 (Homo sapiens) Explore P27487  Go to UniProtKB:  P27487 | |||||
PHAROS:  P27487 GTEx:  ENSG00000197635  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P27487 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MERS-CoV RBD | 204 | Middle East respiratory syndrome-related coronavirus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for R9UQ53 (Middle East respiratory syndrome-related coronavirus) Explore R9UQ53  Go to UniProtKB:  R9UQ53 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | R9UQ53 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], G [auth A], H [auth A], I [auth A], J [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.253 
- R-Value Work: 0.205 
- R-Value Observed: 0.207 
- Space Group: P 61 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 110.609 | α = 90 |
b = 110.609 | β = 90 |
c = 527.713 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHASES | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2013-08-21  Deposition Author(s): Wang, X.Q., Wang, N.S.
Revision History (Full details and data files)
- Version 1.0: 2013-08-21
Type: Initial release - Version 1.1: 2013-09-04
Changes: Database references - Version 1.2: 2015-07-22
Changes: Source and taxonomy, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary