4L22 | pdb_00004l22

Crystal structure of putative glycogen phosphorylase from Streptococcus mutans

PDB DOI: https://doi.org/10.2210/pdb4L22/pdb

Classification: TRANSFERASE
Organism(s): Streptococcus mutans UA159
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-06-04 Released: 2014-06-25
Deposition Author(s): Lihan, M.-Y., Li, G.-L., Li, L.-F., Su, X.-D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.266 (Depositor), 0.270 (DCC)
R-Value Work:
0.222 (Depositor)
R-Value Observed:
0.224 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4L22

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of putative glycogen phosphorylase from Streptococcus mutans

Lihan, M.-Y., Li, G.-L., Li, L.-F., Su, X.-D.

To be published.

Macromolecule Content

Total Structure Weight: 86.92 kDa
Atom Count: 6,114
Modeled Residue Count: 753
Deposited Residue Count: 758
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphorylase	A	758	Streptococcus mutans UA159	Mutation(s): 0 Gene Names: glgP, SMU_1564 EC: 2.4.1.1
UniProt
Find proteins for Q8DT31 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DT31 Go to UniProtKB: Q8DT31
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8DT31
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.266 (Depositor), 0.270 (DCC)
R-Value Work: 0.222 (Depositor)
R-Value Observed: 0.224 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.72	α = 90
b = 85.02	β = 93.3
c = 84.46	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
HKL-2000	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-06-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-06-25
Type: Initial release
Version 1.1: 2019-07-17
Changes: Data collection, Refinement description
Version 1.2: 2023-09-20
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.