4KYK

Crystal structure of mouse glyoxalase I complexed with indomethacin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Zopolrestat as a Human Glyoxalase I Inhibitor and Its Structural Basis

Zhai, J.Zhang, H.Zhang, L.Zhao, Y.Chen, S.Chen, Y.Peng, X.Li, Q.Yuan, M.Hu, X.

(2013) Chemmedchem --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lactoylglutathione lyase
A, B
184Mus musculusMutation(s): 0 
Gene Names: Glo1
EC: 4.4.1.5
Find proteins for Q9CPU0 (Mus musculus)
Go to UniProtKB:  Q9CPU0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
IMN
Query on IMN

Download SDF File 
Download CCD File 
B
INDOMETHACIN
C19 H16 Cl N O4
CGIGDMFJXJATDK-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
IMNKi: 18000 nM BINDINGMOAD
IMNKi: 18000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.199 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 41.865α = 90.00
b = 65.396β = 101.39
c = 64.912γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
CrysalisProdata reduction
MOLREPphasing
SCALAdata scaling
PHENIXrefinement
CrysalisProdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-07
    Type: Initial release
  • Version 1.1: 2019-12-04
    Type: Data collection