4KDR

Crystal Structure of UBIG/SAH complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of the UBIG/SAH complex

Zhu, Y.Teng, M.Li, X.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
3-demethylubiquinone-9 3-methyltransferaseA223Escherichia coli K-12Mutation(s): 0 
Gene Names: ubiGpufXyfaBb2232JW2226
EC: 2.1.1.64 (PDB Primary Data), 2.1.1.222 (PDB Primary Data)
UniProt
Find proteins for P17993 (Escherichia coli (strain K12))
Explore P17993 
Go to UniProtKB:  P17993
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17993
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download Ideal Coordinates CCD File 
B [auth A]S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 141.133α = 90
b = 39.5β = 94.4
c = 40.422γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
SCALAdata scaling
HKL-2000data collection

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 



Entry History 

Deposition Data

  • Deposited Date: 2013-04-25 
  • Released Date: 2014-04-30 
  • Deposition Author(s): Zhu, Y., Teng, M., Li, X.

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-30
    Type: Initial release
  • Version 1.1: 2017-08-16
    Changes: Refinement description, Source and taxonomy
  • Version 1.2: 2019-07-17
    Changes: Data collection, Refinement description