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 4KC0 | pdb_00004kc0

mSTING


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.251 (Depositor), 0.305 (DCC) 
  • R-Value Work: 
    0.194 (Depositor) 
  • R-Value Observed: 
    0.200 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4KC0

This is version 1.1 of the entry. See complete history. 

Literature

Novel c-di-GMP recognition modes of the mouse innate immune adaptor protein STING

Chin, K.H., Tu, Z.L., Su, Y.C., Yu, Y.J., Chen, H.C., Lo, Y.C., Chen, C.P., Barber, G.N., Chuah, M.L., Liang, Z.X., Chou, S.H.

(2013) Acta Crystallogr D Biol Crystallogr 69: 352-366

  • DOI: https://doi.org/10.1107/S0907444912047269
  • Primary Citation Related Structures: 
    4KBY, 4KC0

  • PubMed Abstract: 

    The mammalian ER protein STING (stimulator of interferon genes; also known as MITA, ERIS, MPYS or TMEM173) is an adaptor protein that links the detection of cytosolic dsDNA to the activation of TANK-binding kinase 1 (TBK1) and its downstream transcription factor interferon regulatory factor 3 (IFN3). Recently, STING itself has been found to be the direct receptor of bacterial c-di-GMP, and crystal structures of several human STING C-terminal domain (STING-CTD) dimers in the apo form or in complex with c-di-GMP have been published. Here, a novel set of structures of mouse STING-CTD (mSTING(137-344)) in apo and complex forms determined from crystals obtained under different crystallization conditions are reported. These novel closed-form structures exhibited considerable differences from previously reported open-form human STING-CTD structures. The novel mSTING structures feature extensive interactions between the two monomers, a unique asymmetric c-di-GMP molecule with one guanine base in an unusual syn conformation that is well accommodated in the dimeric interface with many direct specific interactions and two unexpected equivalent secondary peripheral c-di-GMP binding sites. Replacement of the amino acids crucial for specific c-di-GMP binding in mSTING significantly changes the ITC titration profiles and reduces the IFN-β reporter luciferase activity. Taken together, these results reveal a more stable c-di-GMP binding mode of STING proteins that could serve as a template for rational drug design to stimulate interferon production by mammalian cells.


  • Organizational Affiliation: 
    • Agricultural Biotechnology Center, National Chung Hsing University, Taichung 40227, Taiwan.

Macromolecule Content 

  • Total Structure Weight: 47.18 kDa 
  • Atom Count: 2,970 
  • Modeled Residue Count: 360 
  • Deposited Residue Count: 414 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Stimulator of interferon genes protein
A, B
207Mus musculusMutation(s): 0 
Gene Names: Tmem173, Eris Mita, Mpys, Sting
UniProt & NIH Common Fund Data Resources
Find proteins for Q3TBT3 (Mus musculus)
Explore Q3TBT3 
Go to UniProtKB:  Q3TBT3
IMPC:  MGI:1919762
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3TBT3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.251 (Depositor), 0.305 (DCC) 
  • R-Value Work:  0.194 (Depositor) 
  • R-Value Observed: 0.200 (Depositor) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.493α = 90
b = 78.493β = 90
c = 50.409γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
CNSrefinement
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-05-29
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Data collection, Database references