4IXC

Crystal structure of Human Glucokinase in complex with a small molecule activator.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Matched triplicate design sets in the optimisation of glucokinase activators maximising medicinal chemistry information content

Waring, M.J.Bennett, S.N.L.Boyd, S.Campbell, L.Davies, R.D.M.Gerhardt, S.Hargreaves, D.G Martin, N.Robb, G.R.Wilkinson, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glucokinase isoform 3
A
456Homo sapiensGene Names: GCK
EC: 2.7.1.2
Find proteins for P35557 (Homo sapiens)
Go to Gene View: GCK
Go to UniProtKB:  P35557
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
GLC
Query on GLC

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Download CCD File 
A
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
1JD
Query on 1JD

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Download CCD File 
A
(2S)-2-{[1-(3-chloropyridin-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-yl]oxy}-N-(5-methylpyridin-2-yl)-3-(propan-2-yloxy)propanamide
C22 H22 Cl N7 O3
AAGISEXHOPCAHZ-KRWDZBQOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.186 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 77.628α = 90.00
b = 77.628β = 90.00
c = 85.824γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
d*TREKdata scaling
d*TREKdata reduction
CrystalCleardata collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-04-24
    Type: Initial release