4INA | pdb_00004ina

Crystal Structure of the Q7MSS8_WOLSU protein from Wolinella succinogenes. Northeast Structural Genomics Consortium Target WsR35

PDB DOI: https://doi.org/10.2210/pdb4INA/pdb

Classification: OXIDOREDUCTASE
Organism(s): Wolinella succinogenes
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-01-04 Released: 2013-01-16
Deposition Author(s): Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Xiao, R., Kohan, E., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free:
0.222 (Depositor), 0.202 (DCC)
R-Value Work:
0.193 (Depositor), 0.174 (DCC)
R-Value Observed:
0.195 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the Q7MSS8_WOLSU protein from Wolinella succinogenes.

Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Xiao, R., Kohan, E., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 93.32 kDa
Atom Count: 6,418
Modeled Residue Count: 791
Deposited Residue Count: 810
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
saccharopine dehydrogenase	A, B	405	Wolinella succinogenes	Mutation(s): 0 Gene Names: WS0167 EC: 1.5.1.7
UniProt
Find proteins for Q7MSS8 (Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)) Explore Q7MSS8 Go to UniProtKB: Q7MSS8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7MSS8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE Query on MSE	A, B	MET	Selenomethionine	C₅ H₁₁ N O₂ Se

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.222 (Depositor), 0.202 (DCC)
R-Value Work: 0.193 (Depositor), 0.174 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.639	α = 90
b = 95.49	β = 101.8
c = 104.427	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
XDS	data reduction
XSCALE	data scaling
AutoSol	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-01-16

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2013-01-16
Type: Initial release
Version 1.1: 2013-11-27
Changes: Data collection
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary