4I83 | pdb_00004i83

Crystal Structure of (3R)-Hydroxymyristoyl-ACP Dehydratase from Neisseria meningitidis FAM18

• PDB DOI: https://doi.org/10.2210/pdb4I83/pdb

• Classification: LYASE
• Organism(s): Neisseria meningitidis FAM18
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-12-02 Released: 2013-01-16 
• Deposition Author(s): Khandokar, Y.B., Forwood, J.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of (3R)-Hydroxymyristoyl-ACP Dehydratase from Neisseria meningitidis FAM18

Khandokar, Y.B., Forwood, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 101.42 kDa 
• Atom Count: 6,756 
• Modeled Residue Count: 864 
• Deposited Residue Count: 912 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	A, B [auth C], C [auth B], D, E, F	152	Neisseria meningitidis FAM18	Mutation(s): 0  Gene Names: fabZ, NMC0170 EC: 4.2.1.59
UniProt
Find proteins for A1KRL1 (Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)) Explore A1KRL1  Go to UniProtKB:  A1KRL1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.44	α = 90
b = 103.98	β = 90
c = 135.86	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-01-16 
Deposition Author(s): Khandokar, Y.B., Forwood, J.K.

Revision History  

• Version 1.0: 2013-01-16
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Advisory, Refinement description
• Version 1.2: 2023-11-08
  Changes: Advisory, Data collection, Database references, Refinement description