Download MendeleyStructure, function and allostery of the bona fide DHDPS from the plant pathogen Agrobacterium tumefaciens
Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.To be published.
4I7V
Agrobacterium tumefaciens DHDPS with pyruvate
- PDB DOI: 10.2210/pdb4I7V/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Agrobacterium fabacearum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-12-01 Released: 2013-12-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.180
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydrodipicolinate synthase | A, B, C, D | 308 | Agrobacterium fabacearum | Mutation(s): 0 Gene Names: dapA, AGROH133_05014 EC: 4.2.1.52 (PDB Primary Data), 4.3.3.7 (UniProt) |  |
UniProt | |||||
Find proteins for F0L8Z6 (Agrobacterium fabacearum (strain H13-3)) Explore F0L8Z6 Go to UniProtKB: F0L8Z6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F0L8Z6 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KPI Query on KPI | A, B, C, D | L-PEPTIDE LINKING | C9 H16 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.180
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 182.77 | α = 90 |
| b = 77.03 | β = 121.16 |
| c = 98.94 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2013-12-04 Deposition Author(s): Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.
Revision History (Full details and data files)
- Version 1.0: 2013-12-04
Type: Initial release
