4HJX

Crystal structure of F2YRS complexed with F2Y


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A genetically encoded 19F NMR probe for tyrosine phosphorylation.

Li, F.Shi, P.Li, J.Yang, F.Wang, T.Zhang, W.Gao, F.Ding, W.Li, D.Li, J.Xiong, Y.Sun, J.Gong, W.Tian, C.Wang, J.

(2013) Angew Chem Int Ed Engl 52: 3958-3962


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tyrosine-tRNA ligaseAB314Methanocaldococcus jannaschii DSM 2661Mutation(s): 7 
Gene Names: tyrSMJ0389
EC: 6.1.1.1
Find proteins for Q57834 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
Explore Q57834 
Go to UniProtKB:  Q57834
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
F2Y
Query on F2Y

Download CCD File 
A, B
3,5-difluoro-L-tyrosine
C9 H9 F2 N O3
KPKMCRFCNWVLDA-ZETCQYMHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.307α = 90
b = 101.307β = 90
c = 71.779γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-13
    Type: Initial release
  • Version 1.1: 2013-05-22
    Changes: Database references
  • Version 1.2: 2018-03-14
    Changes: Database references