4HJH

Iodide SAD phased crystal structure of a phosphoglucomutase from Brucella melitensis complexed with glucose-6-phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.175 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Iodide SAD phased crystal structure of a phosphoglucomutase from Brucella melitensis complexed with glucose-6-phosphate

Fairman, J.W.Craig, T.K.Staker, B.L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PhosphomannomutaseA, B481Brucella melitensis bv. 1 str. 16MMutation(s): 0 
Gene Names: BAWG_1686
EC: 5.4.2.8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G6Q
Query on G6Q

Download Ideal Coordinates CCD File 
IC [auth B], TA [auth A]GLUCOSE-6-PHOSPHATE
C6 H13 O9 P
VFRROHXSMXFLSN-SLPGGIOYSA-N
 Ligand Interaction
IOD
Query on IOD

Download Ideal Coordinates CCD File 
AA [auth A] , AC [auth B] , BA [auth A] , BC [auth B] , C [auth A] , CA [auth A] , CB [auth B] , CC [auth B] , 
AA [auth A],  AC [auth B],  BA [auth A],  BC [auth B],  C [auth A],  CA [auth A],  CB [auth B],  CC [auth B],  D [auth A],  DA [auth A],  DB [auth B],  DC [auth B],  E [auth A],  EA [auth A],  EB [auth B],  EC [auth B],  F [auth A],  FA [auth A],  FB [auth B],  FC [auth B],  G [auth A],  GA [auth A],  GB [auth B],  GC [auth B],  H [auth A],  HA [auth A],  HB [auth B],  HC [auth B],  I [auth A],  IA [auth A],  IB [auth B],  J [auth A],  JA [auth A],  JB [auth B],  K [auth A],  KA [auth A],  KB [auth B],  L [auth A],  LA [auth A],  LB [auth B],  M [auth A],  MA [auth A],  MB [auth B],  N [auth A],  NA [auth A],  NB [auth B],  O [auth A],  OA [auth A],  OB [auth B],  P [auth A],  PA [auth A],  PB [auth B],  Q [auth A],  QA [auth A],  QB [auth B],  R [auth A],  RA [auth A],  RB [auth B],  S [auth A],  SA [auth A],  SB [auth B],  T [auth A],  TB [auth B],  U [auth A],  UB [auth B],  V [auth A],  VB [auth B],  W [auth A],  WB [auth B],  X [auth A],  XB [auth B],  Y [auth A],  YB [auth B],  Z [auth A],  ZB [auth B]
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AB [auth A], JC [auth B], UA [auth A], VA [auth A], WA [auth A], XA [auth A], YA [auth A], ZA [auth A]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
BB [auth A], KC [auth B]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
A, BL-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.95α = 90
b = 55.98β = 92.18
c = 131.67γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-11-21
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Data collection
  • Version 1.2: 2017-10-11
    Changes: Data collection