4GYC

Structure of the SRII(D75N mutant)/HtrII Complex in I212121 space group ("U" shape)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0501 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Ground state structure of D75N mutant of sensory rhodopsin II in complex with its cognate transducer.

Ishchenko, A.Round, E.Borshchevskiy, V.Grudinin, S.Gushchin, I.Klare, J.P.Balandin, T.Remeeva, A.Engelhard, M.Buldt, G.Gordeliy, V.

(2013) J Photochem Photobiol B 123C: 55-58

  • DOI: 10.1016/j.jphotobiol.2013.03.008

  • PubMed Abstract: 
  • The complex of sensory rhodopsin II (NpSRII) with its cognate transducer (NpHtrII) mediates negative phototaxis in halobacteria Natronomonas pharaonis. Upon light activation NpSRII triggers, by means of NpHtrII, a signal transduction chain homologous ...

    The complex of sensory rhodopsin II (NpSRII) with its cognate transducer (NpHtrII) mediates negative phototaxis in halobacteria Natronomonas pharaonis. Upon light activation NpSRII triggers, by means of NpHtrII, a signal transduction chain homologous to the two component system in eubacterial chemotaxis. Here we report on the crystal structure of the ground state of the mutant NpSRII-D75N/NpHtrII complex in the space group I212121. Mutations of this aspartic acid in light-driven proton pumps dramatically modify or/and inhibit protein functions. However, in vivo studies show that the similar D75N mutation retains functionality of the NpSRII/NpHtrII complex. The structure provides the molecular basis for the explanation of the unexpected observation that the wild and the mutant complexes display identical physiological response on light excitation.


    Organizational Affiliation

    Institute of Complex Systems (ICS), ICS-5: Molecular Biophysics, Research Centre Juelich, 52425 Juelich, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sensory rhodopsin-2
A
245Natronomonas pharaonisMutation(s): 1 
Gene Names: sop2 (sopII)
Find proteins for P42196 (Natronomonas pharaonis)
Go to UniProtKB:  P42196
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Sensory rhodopsin II transducer
B
135Natronomonas pharaonisMutation(s): 0 
Gene Names: htr2 (htrII)
Find proteins for P42259 (Natronomonas pharaonis)
Go to UniProtKB:  P42259
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RET
Query on RET

Download SDF File 
Download CCD File 
A
RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
 Ligand Interaction
LFA
Query on LFA

Download SDF File 
Download CCD File 
A
EICOSANE
LIPID FRAGMENT
C20 H42
CBFCDTFDPHXCNY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0501 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.203 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.465α = 90.00
b = 113.674β = 90.00
c = 126.185γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
ADSCdata collection
MOLREPphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-08
    Type: Initial release
  • Version 1.1: 2017-03-08
    Type: Structure summary