4GUK

New crystal form structure of human NCS1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

new crystal form structure of human NCS1

Fan, C.Lolis, E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Neuronal calcium sensor 1A, C [auth B], B [auth C], D190Homo sapiensMutation(s): 0 
Gene Names: FLUPFREQNCS1
UniProt & NIH Common Fund Data Resources
Find proteins for P62166 (Homo sapiens)
Explore P62166 
Go to UniProtKB:  P62166
PHAROS:  P62166
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 7 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
P2G (Subject of Investigation/LOI)
Query on P2G

Download Ideal Coordinates CCD File 
AA [auth B], BA [auth B], IA [auth D], S [auth C](2S,4R,6R,6AS)-4-(2-AMINO-6-OXO-1,6-DIHYDROPURIN-9-YL)-6-(HYDROXYMETHYL)-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-2-YLPHOSPHONI C ACID
C11 H14 N5 O8 P
GKAPYWCOOQBBHV-KXSYMAMXSA-N
 Ligand Interaction
P3G (Subject of Investigation/LOI)
Query on P3G

Download Ideal Coordinates CCD File 
O [auth C]3,6,9,12,15-PENTAOXAHEPTADECANE
C12 H26 O5
HYDWALOBQJFOMS-UHFFFAOYSA-N
 Ligand Interaction
PG4
Query on PG4

Download Ideal Coordinates CCD File 
CA [auth B], E [auth A], F [auth A], JA [auth D], KA [auth D], N [auth C], X [auth B]TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
ALA
Query on ALA

Download Ideal Coordinates CCD File 
Y [auth B]ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-REOHCLBHSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
G [auth A], H [auth A], HA [auth D], I [auth A], Z [auth B]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
EA [auth D] , FA [auth D] , GA [auth D] , J [auth A] , K [auth A] , L [auth A] , P [auth C] , Q [auth C] , 
EA [auth D],  FA [auth D],  GA [auth D],  J [auth A],  K [auth A],  L [auth A],  P [auth C],  Q [auth C],  R [auth C],  U [auth B],  V [auth B],  W [auth B]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
DA [auth B], LA [auth D], M [auth A], T [auth C]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.987α = 90
b = 54.987β = 90
c = 213.954γ = 120
Software Package:
Software NamePurpose
CBASSdata collection
PHASERphasing
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

  • Deposited Date: 2012-08-29 
  • Released Date: 2013-12-25 
  • Deposition Author(s): Fan, C., Lolis, E.

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-25
    Type: Initial release
  • Version 1.1: 2018-01-24
    Changes: Structure summary
  • Version 1.2: 2019-01-23
    Changes: Data collection, Database references, Structure summary