DyP-type peroxidases from Stretptomyces and Thermobifida can modify organosolv lignin.
Lukk, T., Hetta, A.M.A., Jones, A., Solbiati, J., Majumdar, S., Cronan, J.E., Gerlt, J.A., Nair, S.K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DyP-type peroxidase | 395 | Thermobifida cellulosilytica | Mutation(s): 0  EC: 1.11.1.19 | ||
UniProt | |||||
Find proteins for U3KRF5 (Thermobifida cellulosilytica) Explore U3KRF5  Go to UniProtKB:  U3KRF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | U3KRF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | C [auth A], F [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
GOL Query on GOL | E [auth A], H [auth B], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
OXY Query on OXY | D [auth A], G [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 87.68 | α = 90 |
b = 91.19 | β = 90 |
c = 110.55 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
XDS | data reduction |
PHASER | phasing |