4GPD

THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION

• PDB DOI: https://doi.org/10.2210/pdb4GPD/pdb
• Entry: 4GPD supersedes: 2GPD

• Classification: OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A))
• Organism(s): Homarus americanus
• Mutation(s): No 


• Deposited: 1988-01-04 Released: 1989-07-12 
• Deposition Author(s): Griffith, J.P., Song, S., Rossmann, M.G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Observed: 0.218 

Literature

Structure of lobster apo-D-glyceraldehyde-3-phosphate dehydrogenase at 3.0 A resolution.

Murthy, M.R., Garavito, R.M., Johnson, J.E., Rossmann, M.G.

(1980) J Mol Biol 138: 859-872

• PubMed: 7411626 
• DOI: https://doi.org/10.1016/0022-2836(80)90069-8
• Primary Citation of Related Structures:  
  4GPD

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 143.03 kDa 
• Atom Count: 10,150 
• Modelled Residue Count: 1,332 
• Deposited Residue Count: 1,332 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	A [auth 1], B [auth 2], C [auth 3], D [auth 4]	333	Homarus americanus	Mutation(s): 0  EC: 1.2.1.12
UniProt
Find proteins for P00357 (Homarus americanus) Explore P00357  Go to UniProtKB:  P00357

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Observed: 0.218 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.019	α = 110.85
b = 80.956	β = 71.47
c = 82.545	γ = 116.86

Software Package:

Software Name	Purpose
PROLSQ	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 1989-07-12 
Deposition Author(s): Griffith, J.P., Song, S., Rossmann, M.G.
• This entry supersedes: 2GPD

Revision History  

• Version 1.0: 1989-07-12
  Type: Initial release
  
• Version 1.1: 2008-03-03
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-28
  Changes: Data collection, Database references, Other