4GL8 | pdb_00004gl8

X-ray crystal structure of a periplasmic oligopeptide-binding protein/Oligopeptide ABC transporter(OppAIV) from Borrelia burgdorferi

PDB DOI: https://doi.org/10.2210/pdb4GL8/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Borreliella burgdorferi B31, Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-08-13 Released: 2012-09-19
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.220 (Depositor), 0.225 (DCC)
R-Value Work:
0.172 (Depositor), 0.179 (DCC)
R-Value Observed:
0.174 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

X-ray crystal structure of a periplasmic oligopeptide-binding protein/Oligopeptide ABC transporter(OppAIV) from Borrelia burgdorferi

Fairman, J.W., Abendroth, J., Sankaran, B., Staker, B.L.

To be published.

Macromolecule Content

Total Structure Weight: 121.95 kDa
Atom Count: 8,452
Modeled Residue Count: 1,008
Deposited Residue Count: 1,066
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oligopeptide ABC transporter OppAIV	A, B	529	Borreliella burgdorferi B31	Mutation(s): 0 Gene Names: oppAIV, BB_B16
UniProt
Find proteins for H7C7K8 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore H7C7K8 Go to UniProtKB: H7C7K8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	H7C7K8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptide of unknown sequence	C, D	4	Escherichia coli	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.220 (Depositor), 0.225 (DCC)
R-Value Work: 0.172 (Depositor), 0.179 (DCC)
R-Value Observed: 0.174 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.75	α = 90
b = 103.58	β = 90
c = 104.81	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-09-19

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2012-09-19
Type: Initial release
Version 1.1: 2023-09-13
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.