4GBJ

Crystal structure of NAD-binding 6-phosphogluconate dehydrogenase from Dyadobacter fermentans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.160 
  • R-Value Observed: 0.161 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of NAD-binding 6-phosphogluconate dehydrogenase from Dyadobacter fermentans

Michalska, K.Holowicki, J.Clancy, S.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
6-phosphogluconate dehydrogenase NAD-bindingA, B, C, D297Dyadobacter fermentans DSM 18053Mutation(s): 0 
Gene Names: Dfer_3638
Find proteins for C6VV20 (Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114))
Explore C6VV20 
Go to UniProtKB:  C6VV20
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.633α = 90
b = 89.645β = 90
c = 151.506γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
SHELXmodel building
MLPHAREphasing
DMmodel building
BUCCANEERmodel building
Cootmodel building
BUSTERrefinement
HKL-3000data reduction
HKL-3000data scaling
SHELXphasing
DMphasing
BUCCANEERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-09-05
    Type: Initial release