Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides
Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein beta | A, C [auth B], E [auth C] | 363 | Flock House virus | Mutation(s): 0  Gene Names: alpha, coat protein alpha EC: 3.4.23.44 | |
UniProt | |||||
Find proteins for P12870 (Flock house virus) Explore P12870  Go to UniProtKB:  P12870 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12870 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein gamma | B [auth D], D [auth E], F | 44 | Flock House virus | Mutation(s): 0  Gene Names: alpha, coat protein alpha | |
UniProt | |||||
Find proteins for P12870 (Flock house virus) Explore P12870  Go to UniProtKB:  P12870 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12870 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
Flock House virus genomic RNA | G [auth R] | 15 | Flock House virus | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | K [auth A], N [auth B], O [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
CA Query on CA | H [auth A], I [auth A], J [auth A], L [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 327.66 | α = 90 |
b = 327.66 | β = 90 |
c = 774.49 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
PDB_EXTRACT | data extraction |
GLRF | phasing |