4FI5 | pdb_00004fi5

Crystal structure of the N-terminal domain of Hantaan virus strain 76-118 nucleoprotein

• PDB DOI: https://doi.org/10.2210/pdb4FI5/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Hantaan virus 76-118
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-06-07 Released: 2012-06-20 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.235 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.192 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.196 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the N-terminal domain of Hantaan virus strain 76-118 nucleoprotein

Edwards, T.E., Abendroth, J., Altamura, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 12.83 kDa 
• Atom Count: 645 
• Modeled Residue Count: 71 
• Deposited Residue Count: 113 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoprotein	A	113	Hantaan virus 76-118	Mutation(s): 0  Gene Names: N EC: 3.1
UniProt
Find proteins for P05133 (Hantaan virus (strain 76-118)) Explore P05133  Go to UniProtKB:  P05133

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.235 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.192 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.196 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34FI5

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.4	α = 90
b = 77.4	β = 90
c = 36.52	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-06-20 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2012-06-20
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Refinement description