4F67

Three dimensional structure of the double mutant of UPF0176 protein lpg2838 from Legionella pneumophila at the resolution 1.8A, Northeast Structural Genomics Consortium (NESG) Target LgR82

• PDB DOI: https://doi.org/10.2210/pdb4F67/pdb

• Classification: Structural Genomics, Unknown Function
• Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
• Mutation(s): Yes 


• Deposited: 2012-05-14 Released: 2012-05-30 
• Deposition Author(s): Kuzin, A., Neely, H., Street, L., Odukwe, N., Seetharaman, J., Mao, M., Xiao, R., Kohan, E., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.201 
• R-Value Work: 0.168 
• R-Value Observed: 0.170 

Literature

Three dimensional structure of the double mutant of UPF0176 protein lpg2838 from Legionella pneumophila at the resolution 1.8A, Northeast Structural Genomics Consortium (NESG) Target LgR82

Kuzin, A., Neely, H., Street, L., Odukwe, N., Seetharaman, J., Mao, M., Xiao, R., Kohan, E., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 31.64 kDa 
• Atom Count: 2,394 
• Modelled Residue Count: 264 
• Deposited Residue Count: 265 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0176 protein lpg2838	A	265	Legionella pneumophila subsp. pneumophila str. Philadelphia 1	Mutation(s): 2  Gene Names: lpg2838 EC: 1.14
UniProt
Find proteins for Q5ZRP2 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZRP2  Go to UniProtKB:  Q5ZRP2

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.201 
• R-Value Work: 0.168 
• R-Value Observed: 0.170 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.394	α = 90
b = 77.005	β = 90
c = 81.295	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
AutoSol	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-30 
Deposition Author(s): Kuzin, A., Neely, H., Street, L., Odukwe, N., Seetharaman, J., Mao, M., Xiao, R., Kohan, E., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2012-05-30
  Type: Initial release
  
• Version 1.1: 2024-10-09
  Changes: Data collection, Database references, Derived calculations, Structure summary