4EUW

Crystal structure of a HMG domain of transcription factor SOX-9 bound to DNA (SOX-9/DNA) from Homo sapiens at 2.77 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.247 
  • R-Value Observed: 0.248 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of a HMG domain of transcription factor SOX-9 bound to DNA (SOX-9/DNA) from Homo sapiens at 2.77 A resolution

Joint Center for Structural Genomics (JCSG)Partnership for Stem Cell Biology

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription factor SOX-9A106Homo sapiensMutation(s): 0 
Gene Names: SGT82680SOX9
Find proteins for P48436 (Homo sapiens)
Explore P48436 
Go to UniProtKB:  P48436
NIH Common Fund Data Resources
PHAROS  P48436
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*CP*TP*CP*TP*TP*TP*GP*AP*GP*AP*AP*G)-3')B12Homo sapiens
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*CP*TP*TP*CP*TP*CP*AP*AP*AP*GP*AP*G)-3')C12Homo sapiens
      Experimental Data & Validation

      Experimental Data

      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 55.772α = 90
      b = 134.654β = 90
      c = 49.987γ = 90
      Software Package:
      Software NamePurpose
      REFMACrefinement
      PDB_EXTRACTdata extraction
      PHASERphasing
      XSCALEdata scaling
      PHENIXrefinement
      MolProbitymodel building
      XDSdata reduction

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History 

      • Version 1.0: 2012-06-13
        Type: Initial release
      • Version 1.1: 2012-08-29
        Changes: Structure summary
      • Version 1.2: 2017-11-15
        Changes: Refinement description, Source and taxonomy
      • Version 1.3: 2019-07-17
        Changes: Data collection, Refinement description