4EIE

Crystal structure of cytochrome c6C from Synechococcus sp. PCC 7002


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.03 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.136 
  • R-Value Observed: 0.137 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cytochrome c6 and c6C from Synechococcus sp. PCC 7002 - structure and function.

Bialek, W.Krzywda, S.Zatwarnicki, P.Jaskolski, M.Szczepaniak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c6A87Synechococcus sp. PCC 7002Mutation(s): 0 
Gene Names: petJpetJ2SYNPCC7002_A2391
Find proteins for Q8KX15 (Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6))
Explore Q8KX15 
Go to UniProtKB:  Q8KX15
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.03 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.136 
  • R-Value Observed: 0.137 
  • Space Group: P 4 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.13α = 90
b = 56.13β = 90
c = 49.64γ = 90
Software Package:
Software NamePurpose
AUTOMARdata collection
Auto-Rickshawphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-04-10
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Advisory, Data collection