Download MendeleyCytochrome c6 and c6C from Synechococcus sp. PCC 7002 - structure and function.
Bialek, W., Krzywda, S., Zatwarnicki, P., Jaskolski, M., Szczepaniak, A.To be published.
4EIE
Crystal structure of cytochrome c6C from Synechococcus sp. PCC 7002
- PDB DOI: https://doi.org/10.2210/pdb4EIE/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Synechococcus sp. PCC 7002
- Expression System: Escherichia coli DH5[alpha]
- Mutation(s): No
- Deposited: 2012-04-05 Released: 2013-04-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.03 Å
- R-Value Free: 0.163
- R-Value Work: 0.136
- R-Value Observed: 0.137
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome c6 | 87 | Synechococcus sp. PCC 7002 | Mutation(s): 0 Gene Names: petJ, petJ2, SYNPCC7002_A2391 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEC Query on HEC | B [auth A] | HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N |  | Ligand Interaction | |
| CL Query on CL | C [auth A], D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| NA Query on NA | G [auth A], H [auth A], I [auth A], J [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.03 Å
- R-Value Free: 0.163
- R-Value Work: 0.136
- R-Value Observed: 0.137
- Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.13 | α = 90 |
| b = 56.13 | β = 90 |
| c = 49.64 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AUTOMAR | data collection |
| Auto-Rickshaw | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2013-04-10 Deposition Author(s): Krzywda, S., Bialek, W., Zatwarnicki, P., Jaskolski, M., Szczepaniak, A.
Revision History (Full details and data files)
- Version 1.0: 2013-04-10
Type: Initial release - Version 1.1: 2017-09-27
Changes: Advisory, Data collection - Version 2.0: 2021-03-10
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
