4EFD

Crystal Structure of an M17 aminopeptidase from Trypanosoma Brucei, Tb427tmp.02.4440


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of an M17 aminopeptidase from Trypanosoma Brucei, Tb427tmp.02.4440

Wernimont, A.K.Osman, K.T.Loppnau, P.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Hui, R.Lin, Y.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Aminopeptidase
A, B, C, D, E, F
A, B, C, D, E, F
522Trypanosoma brucei brucei TREU927Mutation(s): 0 
Gene Names: Tb11.02.4440
UniProt
Find proteins for Q385B0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q385B0 
Go to UniProtKB:  Q385B0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ385B0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
DA [auth D],
EA [auth D],
G [auth A],
H [auth A],
HA [auth E],
DA [auth D],
EA [auth D],
G [auth A],
H [auth A],
HA [auth E],
IA [auth E],
KA [auth F],
LA [auth F],
N [auth B],
O [auth B],
V [auth C],
W [auth C]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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AA [auth C],
BA [auth C],
J [auth A],
K [auth A],
L [auth A],
AA [auth C],
BA [auth C],
J [auth A],
K [auth A],
L [auth A],
R [auth B],
S [auth B],
T [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MN
Query on MN

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FA [auth D],
I [auth A],
MA [auth F],
NA [auth F],
P [auth B],
FA [auth D],
I [auth A],
MA [auth F],
NA [auth F],
P [auth B],
Q [auth B],
Y [auth C],
Z [auth C]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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OA [auth F],
X [auth C]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
CA [auth C],
GA [auth D],
JA [auth E],
M [auth A],
PA [auth F],
CA [auth C],
GA [auth D],
JA [auth E],
M [auth A],
PA [auth F],
U [auth B]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.228 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.916α = 90
b = 161.74β = 90
c = 176.315γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
BALBESphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-05-30
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description