Download MendeleyThymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine
Timofeev, V.I., Abramchik, Y.A., Esipov, R.S., Kuranova, I.P.To be published.
4EAD
Thymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine
- PDB DOI: https://doi.org/10.2210/pdb4EAD/pdb
- Classification: Transferase/Transferase inhibitor
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-03-22 Released: 2013-03-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.192
- R-Value Work: 0.145
- R-Value Observed: 0.147
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thymidine phosphorylase | A | 440 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: b4382, deoA, JW4345, tpp, ttg EC: 2.4.2.4 |  |
UniProt | |||||
Find proteins for P07650 (Escherichia coli (strain K12)) Explore P07650 Go to UniProtKB: P07650 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07650 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 0NP Query on 0NP | B [auth A] | 2',3'-dideoxy-2'-fluoro-3'-triaza-1,2-dien-2-ium-1-yluridine C9 H11 F N5 O4 YRIDFNZYEULFDH-XVFCMESISA-O |  | Ligand Interaction | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], G [auth A], K [auth A], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | F [auth A], H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.192
- R-Value Work: 0.145
- R-Value Observed: 0.147
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 129.862 | α = 90 |
| b = 129.862 | β = 90 |
| c = 67.656 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-03-27 Deposition Author(s): Timofeev, V.I., Abramchik, Y.A., Esipov, R.S., Kuranova, I.P.
Revision History (Full details and data files)
- Version 1.0: 2013-03-27
Type: Initial release
