4EAD

Thymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Thymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine

Timofeev, V.I.Abramchik, Y.A.Esipov, R.S.Kuranova, I.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidine phosphorylase
A
440Escherichia coli (strain K12)Gene Names: deoA (tpp, ttg)
EC: 2.4.2.4
Find proteins for P07650 (Escherichia coli (strain K12))
Go to UniProtKB:  P07650
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
0NP
Query on 0NP

Download SDF File 
Download CCD File 
A
2',3'-dideoxy-2'-fluoro-3'-triaza-1,2-dien-2-ium-1-yluridine
C9 H11 F N5 O4
YRIDFNZYEULFDH-XVFCMESISA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.145 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 129.862α = 90.00
b = 129.862β = 90.00
c = 67.656γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
HKL-2000data scaling
HKL-2000data collection
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-27
    Type: Initial release