4DTK

Novel and selective pan-PIM kinase inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of novel benzylidene-1,3-thiazolidine-2,4-diones as potent and selective inhibitors of the PIM-1, PIM-2, and PIM-3 protein kinases.

Dakin, L.A.Block, M.H.Chen, H.Code, E.Dowling, J.E.Feng, X.Ferguson, A.D.Green, I.Hird, A.W.Howard, T.Keeton, E.K.Lamb, M.L.Lyne, P.D.Pollard, H.Read, J.Wu, A.J.Zhang, T.Zheng, X.

(2012) Bioorg.Med.Chem.Lett. 22: 4599-4604

  • DOI: 10.1016/j.bmcl.2012.05.098

  • PubMed Abstract: 
  • Novel substituted benzylidene-1,3-thiazolidine-2,4-diones (TZDs) have been identified as potent and highly selective inhibitors of the PIM kinases. The synthesis and SAR of these compounds are described, along with X-ray crystallographic, anti-prolif ...

    Novel substituted benzylidene-1,3-thiazolidine-2,4-diones (TZDs) have been identified as potent and highly selective inhibitors of the PIM kinases. The synthesis and SAR of these compounds are described, along with X-ray crystallographic, anti-proliferative, and selectivity data.


    Organizational Affiliation

    Oncology iMed Sciences Group, AstraZeneca R&D Boston, 35 Gatehouse Drive, Waltham, MA 02451, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase pim-1
A
276Homo sapiensMutation(s): 0 
Gene Names: PIM1
EC: 2.7.11.1
Find proteins for P11309 (Homo sapiens)
Go to Gene View: PIM1
Go to UniProtKB:  P11309
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
7LI
Query on 7LI

Download SDF File 
Download CCD File 
A
(5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione
C18 H23 N3 O3 S
ULMRMVZQMKZWKJ-MLJKTZRHSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
7LIIC50: <4 nM BINDINGMOAD
7LIIC50: 3 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.165 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 97.444α = 90.00
b = 97.444β = 90.00
c = 81.363γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
ADSCdata collection
MOLREPphasing
BUSTERrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-02-21 
  • Released Date: 2012-07-11 
  • Deposition Author(s): Ferguson, A.D.

Revision History 

  • Version 1.0: 2012-07-11
    Type: Initial release
  • Version 1.1: 2012-07-25
    Type: Database references