Macromolecule Content

Total Structure Weight: 23.4 kDa
Atom Count: 1,684
Modelled Residue Count: 194
Deposited Residue Count: 206
Unique protein chains: 1

4D5F

tetracycline repressor class H, apo form

PDB DOI: https://doi.org/10.2210/pdb4D5F/pdb

Classification: TRANSCRIPTION
Organism(s): Mannheimia haemolytica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-11-04 Released: 2016-01-20
Deposition Author(s): Palm, G.J., Quast, J., Hinrichs, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.251
R-Value Work: 0.189
R-Value Observed: 0.191

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Domain Movement in Tetracycline Repressor Classes

Palm, G.J., Quast, J., Hinrichs, W.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TETRACYCLINE RESISTANCE REPRESSOR PROTEIN	A	206	Mannheimia haemolytica	Mutation(s): 0 Gene Names: tetR, CKG23_08505, CKG23_08565, FEA53_13890
UniProt
Find proteins for Q9Z358 (Mannheimia haemolytica) Explore Q9Z358 Go to UniProtKB: Q9Z358
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Z358
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.251
R-Value Work: 0.189
R-Value Observed: 0.191
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.456	α = 90
b = 109.037	β = 90
c = 69.687	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-01-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-01-20
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.